Gene expression

Post-analysis categorization
- Literature search
Post-survey categorization
- Features validated in most cases
- Features not validated
Simple lists
Preliminary lists

Tool name

FlyBase - A Database of Drosophila Genes

URL

Important features

A database that integrates genetic and genomic data about the Drosophilidae. The data include sequence-level gene models, molecular classification of gene product functions, mutant phenotypes, mutant lesions and chromosome aberrations, gene expression patterns, transgene insertions, and anatomical images. The literature-curated data in FlyBase provides gene expression data at a specific developmental stage, tissue and cellular location. Also, covers high-throughput RNA-seq developmental stage data from modENCODE.

Citations

Ashburner M, Drysdale R. FlyBase--the Drosophila genetic database. Development. 1994 Jul;120(7):2077-9. PubMed PMID: 7925011.

Year of publication

1994

Rank by usage frequency

Comments

Function

Proteomic, Other technique(s), Multiple techniques, Other species

Category

Online, Free

Working status

Functional

Other features

Other citations

1. Bellen HJ, Smith RF. FlyBase: a virtual Drosophila cornucopia. Trends Genet. 1995 Nov;11(11):456-7. PubMed PMID: 8578603. 2. FlyBase: the Drosophila database. The Flybase Consortium. Nucleic Acids Res. 1996 Jan 1;24(1):53-6. PubMed PMID: 8594600; PubMed Central PMCID: PMC145580. 3. Gelbart WM, Crosby M, Matthews B, Rindone WP, Chillemi J, Russo Twombly S, Emmert D, Ashburner M, Drysdale RA, Whitfield E, Millburn GH, de Grey A, Kaufman T, Matthews K, Gilbert D, Strelets V, Tolstoshev C. FlyBase: a Drosophila database. The FlyBase consortium. Nucleic Acids Res. 1997 Jan 1;25(1):63-6. PubMed PMID: 9045212; PubMed Central PMCID: PMC146418. 4. FlyBase: a Drosophila database. Flybase Consortium. Nucleic Acids Res. 1998 Jan 1;26(1):85-8. PubMed PMID: 9399806; PubMed Central PMCID: PMC147222. 5. The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium. Nucleic Acids Res. 1999 Jan 1;27(1):85-8. PubMed PMID: 9847148; PubMed Central PMCID: PMC148103. 6. Drysdale R. Phenotypic data in FlyBase. Brief Bioinform. 2001 Mar;2(1):68-80. PubMed PMID: 11465064. 7. FlyBase Consortium. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 2002 Jan 1;30(1):106-8. PubMed PMID: 11752267; PubMed Central PMCID: PMC99082. 8. FlyBase Consortium. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 2003 Jan 1;31(1):172-5. PubMed PMID: 12519974; PubMed Central PMCID: PMC165541. 9. Drysdale RA, Crosby MA; FlyBase Consortium. FlyBase: genes and gene models. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D390-5. PubMed PMID: 15608223; PubMed Central PMCID: PMC540000. 10. Grumbling G, Strelets V. FlyBase: anatomical data, images and queries. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D484-8. PubMed PMID: 16381917; PubMed Central PMCID: PMC1347431. 11. Wilson RJ, Goodman JL, Strelets VB; FlyBase Consortium. FlyBase: integration and improvements to query tools. Nucleic Acids Res. 2008 Jan;36(Database issue):D588-93. Epub 2007 Dec 26. PubMed PMID: 18160408; PubMed Central PMCID: PMC2238994. 12. Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium. FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. Epub 2008 Oct 23. PubMed PMID: 18948289; PubMed Central PMCID: PMC2686450. 13. Drysdale R; FlyBase Consortium. FlyBase : a database for the Drosophila research community. Methods Mol Biol. 2008;420:45-59. Review. PubMed PMID: 18641940.